datavis/emvis
0.0.3
Guide
Overview
What are datavis and emvis?
Installation
Citing
Contributing
Licence
Basic Image Models and Views
ImageModel
ImageView
SlicesModel
SlicesView
MultiSliceView
Table Model and related Views
TableModel
ColumnConfig and TableConfig
ItemsView
ColumnsView
GalleryView
Composed Views
VolumeModel
VolumeView
DataView
Picker Model and View
PickerModel
PickerView
Example
Reference
datavis API
models
Params
Param
Form
Image Models
ImageModel
SlicesModel
VolumeModel
Table Models
ColumnInfo
ColumnConfig
TableModel
TableConfig
Picking
Coordinate
Micrograph
PickerModel
views
Image
ImageView
SlicesView
MultiSliceView
VolumeView
Table
GalleryView
ColumnsView
ItemsView
DataView
Image List
ImageListView
VolumeListView
DualImageListView
ImageMaskListView
Picking
PickerView
widgets
Widgets
SpinSlider
ZoomSpinBox
IconSpinBox
AxisSelector
ParamWidget
OptionsWidget
TextWidget
NumericWidget
BoolWidget
ButtonWidget
FormWidget
PagingInfo
PageBar
ViewPanel
TextView
ActionsToolBar
OnOffAction
MultiStateAction
TriggerAction
Browser
FileModelView
FileBrowser
emvis API
utils
EmType
EmPath
ImageManager
ImageRef
models
EmTableModel
EmStackModel
EmVolumeModel
EmListModel
views
EmBrowser
ViewsFactory
Applications
em-viewer
Viewing a Micrograph
Viewing a Movie
Viewing a Volume
File Browsing
em-picker
Manual Picking
Showing Picking Results
Comparing Picking Results
datavis/emvis
Docs
»
Index
Index
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A
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B
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C
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D
|
E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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Z
_
__init__() (datavis.models.ColumnConfig method)
(datavis.models.ColumnInfo method)
(datavis.models.Form method)
(datavis.models.ImageModel method)
(datavis.models.Param method)
(datavis.models.PickerModel.PickerModel.Result method)
(datavis.models.SlicesModel method)
(datavis.models.TableConfig method)
(datavis.models.VolumeModel method)
(datavis.views.ColumnsView method)
(datavis.views.DataView method)
(datavis.views.DualImageListView method)
(datavis.views.GalleryView method)
(datavis.views.ImageListView method)
(datavis.views.ImageMaskListView method)
(datavis.views.ImageView method)
(datavis.views.ItemsView method)
(datavis.views.MultiSliceView method)
(datavis.views.SlicesView method)
(datavis.views.VolumeListView method)
(datavis.views.VolumeView method)
(datavis.widgets.ActionsToolBar method)
(datavis.widgets.AxisSelector method)
(datavis.widgets.BoolWidget method)
(datavis.widgets.Browser method)
(datavis.widgets.ButtonWidget method)
(datavis.widgets.FileBrowser method)
(datavis.widgets.FileModelView method)
(datavis.widgets.FormWidget method)
(datavis.widgets.IconSpinBox method)
(datavis.widgets.MultiStateAction method)
(datavis.widgets.NumericWidget method)
(datavis.widgets.OnOffAction method)
(datavis.widgets.OptionsWidget method)
(datavis.widgets.PageBar method)
(datavis.widgets.PagingInfo method)
(datavis.widgets.ParamWidget method)
(datavis.widgets.SpinSlider method)
(datavis.widgets.TextView method)
(datavis.widgets.TextWidget method)
(datavis.widgets.TriggerAction method)
(datavis.widgets.ViewPanel method)
(datavis.widgets.ZoomSpinBox method)
(emvis.models.EmListModel method)
(emvis.models.EmStackModel method)
(emvis.models.EmTableModel method)
(emvis.models.EmVolumeModel method)
(emvis.utils.ImageManager method)
(emvis.utils.ImageRef method)
(emvis.views.EmBrowser method)
(emvis.views.ViewsFactory method)
A
ActionsToolBar (class in datavis.widgets)
add() (datavis.widgets.MultiStateAction method)
addAction() (datavis.widgets.ActionsToolBar method)
addColumnConfig() (datavis.models.TableConfig method)
addCoordinates() (datavis.models.PickerModel method)
addMicrograph() (datavis.models.PickerModel method)
addSeparator() (datavis.widgets.ActionsToolBar method)
addWidget() (datavis.widgets.ActionsToolBar method)
(datavis.widgets.ViewPanel method)
AxisSelector (class in datavis.widgets)
B
BoolWidget (class in datavis.widgets)
Browser (class in datavis.widgets)
ButtonWidget (class in datavis.widgets)
C
changeParam() (datavis.models.PickerModel method)
changeSelection() (datavis.views.ColumnsView method)
(datavis.views.GalleryView method)
(datavis.views.ItemsView method)
check() (datavis.models.ColumnConfig method)
clear() (datavis.views.ColumnsView method)
(datavis.views.GalleryView method)
(datavis.views.ImageView method)
(datavis.views.ItemsView method)
(datavis.views.MultiSliceView method)
(datavis.views.SlicesView method)
(datavis.views.VolumeView method)
(datavis.widgets.TextView method)
clearMicrograph() (datavis.models.PickerModel method)
clone() (datavis.models.ColumnConfig method)
ColumnConfig (class in datavis.models)
ColumnInfo (class in datavis.models)
ColumnsView (class in datavis.views)
config() (datavis.models.ColumnConfig method)
Coordinate (class in datavis.models)
createCoordinate() (datavis.models.PickerModel method)
createDataView() (emvis.views.ViewsFactory static method)
createDefaultConfig() (datavis.models.TableModel method)
createImageView() (emvis.views.ViewsFactory static method)
createPanel() (datavis.widgets.ActionsToolBar method)
createPickerView() (emvis.views.ViewsFactory static method)
createSlicesView() (emvis.views.ViewsFactory static method)
createVolumeView() (emvis.views.ViewsFactory static method)
currentRow() (datavis.views.ItemsView method)
D
DataView (class in datavis.views)
datavis.models (module)
datavis.views (module)
datavis.widgets (module)
DualImageListView (class in datavis.views)
E
EmBrowser (class in emvis.views)
emitValueChanged() (datavis.widgets.ParamWidget method)
EmListModel (class in emvis.models)
EmPath (class in emvis.utils)
EmStackModel (class in emvis.models)
EmTableModel (class in emvis.models)
EmType (class in emvis.utils)
emvis.models (module)
emvis.utils (module)
emvis.views (module)
EmVolumeModel (class in emvis.models)
eventFilter() (datavis.views.ImageView method)
exists() (emvis.utils.EmPath class method)
expandTree() (datavis.widgets.FileModelView method)
export() (datavis.views.ImageView method)
F
FileBrowser (class in datavis.widgets)
FileModelView (class in datavis.widgets)
findImagePrefix() (emvis.utils.ImageManager class method)
fitToSize() (datavis.views.ImageView method)
(datavis.views.MultiSliceView method)
(datavis.views.VolumeView method)
Form (class in datavis.models)
FormWidget (class in datavis.widgets)
G
GalleryView (class in datavis.views)
get() (datavis.widgets.BoolWidget method)
(datavis.widgets.ButtonWidget method)
(datavis.widgets.MultiStateAction method)
(datavis.widgets.OptionsWidget method)
(datavis.widgets.ParamWidget method)
(datavis.widgets.TextWidget method)
getAllViews() (datavis.views.DataView method)
getAvailableViews() (datavis.views.DataView method)
getAxis() (datavis.views.MultiSliceView method)
getBoxSize() (datavis.models.PickerModel method)
getColumnConfig() (datavis.models.TableConfig method)
getColumns() (datavis.models.PickerModel method)
getColumnsCount() (datavis.models.PickerModel method)
(datavis.models.TableConfig method)
(datavis.models.TableModel method)
(emvis.models.EmTableModel method)
getColumnWidth() (datavis.views.ColumnsView method)
getCurrentAction() (datavis.widgets.ActionsToolBar method)
getCurrentAxis() (datavis.widgets.AxisSelector method)
getCurrentIndex() (datavis.widgets.Browser method)
getCurrentPage() (datavis.widgets.PageBar method)
getCurrentRow() (datavis.views.ColumnsView method)
(datavis.views.DataView method)
(datavis.views.GalleryView method)
getData() (datavis.models.ImageModel method)
(datavis.models.PickerModel method)
(datavis.models.SlicesModel method)
(datavis.models.TableModel method)
(emvis.models.EmListModel method)
(emvis.models.EmStackModel method)
(emvis.models.EmTableModel method)
(emvis.utils.ImageManager method)
getDescription() (datavis.models.ColumnConfig method)
getDim() (datavis.models.ImageModel method)
(emvis.utils.ImageManager method)
getDisplayConfig() (datavis.views.ColumnsView method)
(datavis.views.GalleryView method)
(datavis.views.ItemsView method)
getHeaderSize() (datavis.views.ColumnsView method)
getHorizontalHeader() (datavis.views.ColumnsView method)
getIconSize() (datavis.widgets.ActionsToolBar method)
getId() (datavis.models.Micrograph method)
getImage() (emvis.utils.ImageManager method)
getImageInfo() (datavis.models.PickerModel method)
getImageItem() (datavis.views.ImageView method)
getImageItemDelegate() (datavis.views.GalleryView method)
getImageModel() (datavis.models.SlicesModel method)
getImageView() (datavis.views.ImageView method)
(datavis.views.SlicesView method)
getInfo() (emvis.utils.ImageManager method)
getLabel() (datavis.models.ColumnConfig method)
(datavis.models.PickerModel method)
getLabels() (datavis.models.ColumnConfig method)
(datavis.models.PickerModel method)
getLocation() (datavis.models.ImageModel method)
(emvis.models.EmStackModel method)
getMask() (datavis.views.ImageView method)
getMaskColor() (datavis.views.ImageView method)
getMaskData() (datavis.views.ImageView method)
getMaskImage() (datavis.views.ImageView method)
getMaskSize() (datavis.views.ImageView method)
getMaskType() (datavis.views.ImageView method)
getMicrograph() (datavis.models.PickerModel method)
getMicrographByIndex() (datavis.models.PickerModel method)
getMicrographMask() (datavis.models.PickerModel method)
getMicrographMaskColor() (datavis.models.PickerModel method)
getMinMax() (datavis.models.ImageModel method)
getMode() (datavis.views.MultiSliceView method)
getModel() (datavis.views.DataView method)
(datavis.views.GalleryView method)
(datavis.views.VolumeView method)
(datavis.widgets.Browser method)
(emvis.models.EmListModel method)
getModelColumn() (datavis.views.GalleryView method)
getName() (datavis.models.ColumnInfo method)
getPage() (datavis.views.DataView method)
(datavis.widgets.PagingInfo method)
getPageCount() (datavis.views.DataView method)
(datavis.widgets.PageBar method)
getPageSize() (datavis.views.ColumnsView method)
getPanelMaxWidth() (datavis.widgets.ActionsToolBar method)
getParams() (datavis.models.PickerModel method)
getParamValues() (datavis.widgets.FormWidget method)
getPath() (datavis.models.Micrograph method)
getPreferredSize() (datavis.views.ColumnsView method)
(datavis.views.DataView method)
(datavis.views.GalleryView method)
(datavis.views.ImageView method)
(datavis.views.ItemsView method)
(datavis.views.MultiSliceView method)
(datavis.views.PickerView method)
(datavis.views.SlicesView method)
getRange() (datavis.views.SlicesView method)
(datavis.widgets.IconSpinBox method)
(datavis.widgets.SpinSlider method)
getRef() (emvis.utils.ImageManager class method)
getRootPath() (datavis.widgets.FileModelView method)
getRowsCount() (datavis.models.PickerModel method)
(datavis.models.TableModel method)
(emvis.models.EmListModel method)
(emvis.models.EmTableModel method)
getScale() (datavis.views.ImageView method)
(datavis.views.SlicesView method)
getSelectedPath() (datavis.widgets.FileModelView method)
getSelectedViewMode() (datavis.views.DataView method)
getSliceData() (datavis.models.VolumeModel method)
getSliceImageModel() (datavis.models.VolumeModel method)
getSlicesModel() (datavis.models.VolumeModel method)
getSliceView() (datavis.views.MultiSliceView method)
getTableName() (datavis.models.TableModel method)
getTableNames() (datavis.models.TableModel method)
getText() (datavis.views.MultiSliceView method)
(datavis.views.SlicesView method)
(datavis.widgets.SpinSlider method)
getToolBar() (datavis.views.ImageView method)
getUnits() (datavis.widgets.ZoomSpinBox method)
getUserData() (datavis.widgets.TriggerAction method)
getValue() (datavis.models.PickerModel method)
(datavis.models.TableModel method)
(datavis.views.MultiSliceView method)
(datavis.views.SlicesView method)
(datavis.widgets.IconSpinBox method)
(datavis.widgets.SpinSlider method)
(emvis.models.EmListModel method)
(emvis.models.EmTableModel method)
getView() (datavis.views.DataView method)
(datavis.views.ImageView method)
getViewBox() (datavis.views.ImageView method)
getViewDims() (datavis.views.ColumnsView method)
(datavis.views.GalleryView method)
(datavis.views.ItemsView method)
getViewKey() (datavis.views.DataView method)
getViewRect() (datavis.views.ImageView method)
getViewSize() (datavis.views.ImageView method)
getViewType() (datavis.views.ColumnsView method)
(datavis.views.GalleryView method)
(datavis.views.ItemsView method)
getWidget() (datavis.widgets.ViewPanel method)
goHome() (datavis.widgets.FileModelView method)
goUp() (datavis.widgets.FileModelView method)
GRID (datavis.widgets.ViewPanel attribute)
H
hasColumnConfig() (datavis.models.TableConfig method)
hasView() (datavis.views.DataView method)
hasVisiblePanel() (datavis.widgets.ActionsToolBar method)
HORIZONTAL (datavis.widgets.AxisSelector attribute)
(datavis.widgets.ViewPanel attribute)
horizontalFlip() (datavis.views.ImageView method)
HSPLITTER (datavis.widgets.ViewPanel attribute)
I
IconSpinBox (class in datavis.widgets)
ImageListView (class in datavis.views)
ImageManager (class in emvis.utils)
ImageMaskListView (class in datavis.views)
ImageModel (class in datavis.models)
imageModelChanged() (datavis.views.ImageView method)
ImageRef (class in emvis.utils)
ImageView (class in datavis.views)
isEmpty() (datavis.views.ImageView method)
isImage() (emvis.utils.EmPath class method)
isLastPage() (datavis.widgets.PagingInfo method)
isReadOnly() (datavis.widgets.TextView method)
ItemsView (class in datavis.views)
iterColumns() (datavis.models.PickerModel method)
(datavis.models.TableModel method)
(emvis.models.EmListModel method)
(emvis.models.EmTableModel method)
iterCoordinates() (datavis.models.PickerModel method)
L
load() (datavis.models.Form static method)
(datavis.models.Param static method)
loadTable() (datavis.models.TableModel method)
M
Micrograph (class in datavis.models)
modelChanged() (datavis.views.ColumnsView method)
(datavis.views.GalleryView method)
(datavis.views.ItemsView method)
MultiSliceView (class in datavis.views)
MultiStateAction (class in datavis.widgets)
N
next() (datavis.widgets.MultiStateAction method)
nextPage() (datavis.widgets.PagingInfo method)
NumericWidget (class in datavis.widgets)
O
onItemChanged() (datavis.views.ImageListView method)
OnOffAction (class in datavis.widgets)
OptionsWidget (class in datavis.widgets)
P
PageBar (class in datavis.widgets)
PagingInfo (class in datavis.widgets)
Param (class in datavis.models)
ParamWidget (class in datavis.widgets)
parsePath() (emvis.utils.ImageRef class method)
PickerModel (class in datavis.models)
PickerModel.Result (class in datavis.models)
PickerView (class in datavis.views)
previous() (datavis.widgets.MultiStateAction method)
prevPage() (datavis.widgets.PagingInfo method)
R
readText() (datavis.widgets.TextView method)
removeCoordinates() (datavis.models.PickerModel method)
resetView() (datavis.views.ColumnsView method)
(datavis.views.GalleryView method)
resizeColumnToContents() (datavis.views.ColumnsView method)
rotate() (datavis.views.ImageView method)
S
selectMicrograph() (datavis.models.PickerModel method)
selectPath() (datavis.widgets.FileModelView method)
selectRow() (datavis.views.ColumnsView method)
(datavis.views.DataView method)
(datavis.views.GalleryView method)
(datavis.views.ItemsView method)
set() (datavis.models.Coordinate method)
(datavis.models.Param method)
(datavis.widgets.BoolWidget method)
(datavis.widgets.ButtonWidget method)
(datavis.widgets.MultiStateAction method)
(datavis.widgets.OptionsWidget method)
(datavis.widgets.ParamWidget method)
(datavis.widgets.TextWidget method)
setAxis() (datavis.views.MultiSliceView method)
setAxisOrientation() (datavis.views.ImageView method)
setBoxSize() (datavis.models.PickerModel method)
setColumnWidth() (datavis.views.ColumnsView method)
setCurrentAxis() (datavis.widgets.AxisSelector method)
setCurrentPage() (datavis.widgets.PageBar method)
(datavis.widgets.PagingInfo method)
setData() (datavis.models.ImageModel method)
setFocusPolicy() (datavis.widgets.IconSpinBox method)
(datavis.widgets.SpinSlider method)
setHighlighter() (datavis.widgets.TextView method)
setIconSize() (datavis.views.ColumnsView method)
(datavis.views.GalleryView method)
setId() (datavis.models.Micrograph method)
setImageInfo() (datavis.views.ImageView method)
setImageItemDelegate() (datavis.views.GalleryView method)
setImageMask() (datavis.views.ImageView method)
setLabels() (datavis.models.ColumnConfig method)
setLevels() (datavis.views.ImageView method)
setLinesWrap() (datavis.widgets.TextView method)
setMaskColor() (datavis.views.ImageMaskListView method)
(datavis.views.ImageView method)
setModel() (datavis.views.ColumnsView method)
(datavis.views.DataView method)
(datavis.views.GalleryView method)
(datavis.views.ImageListView method)
(datavis.views.ImageView method)
(datavis.views.ItemsView method)
(datavis.views.MultiSliceView method)
(datavis.views.SlicesView method)
(datavis.views.VolumeListView method)
(datavis.views.VolumeView method)
setModelColumn() (datavis.views.GalleryView method)
(datavis.views.ItemsView method)
setPage() (datavis.views.DataView method)
setPageSize() (datavis.widgets.PagingInfo method)
setPagingInfo() (datavis.widgets.PageBar method)
setPanelMaxSize() (datavis.widgets.ActionsToolBar method)
setPanelMinSize() (datavis.widgets.ActionsToolBar method)
setPath() (datavis.models.Micrograph method)
setRange() (datavis.widgets.IconSpinBox method)
(datavis.widgets.SpinSlider method)
setReadOnly() (datavis.widgets.TextView method)
setRoiMaskSize() (datavis.views.ImageView method)
setRoiMaskSizeVisible() (datavis.views.ImageView method)
setRootIndex() (datavis.widgets.FileModelView method)
setRootPath() (datavis.widgets.FileModelView method)
setRowHeight() (datavis.views.ColumnsView method)
setScale() (datavis.views.ImageView method)
(datavis.views.MultiSliceView method)
(datavis.views.SlicesView method)
setSelectionBehavior() (datavis.views.ColumnsView method)
(datavis.views.DataView method)
(datavis.views.GalleryView method)
setSelectionMode() (datavis.views.ColumnsView method)
(datavis.views.DataView method)
(datavis.views.GalleryView method)
setSortRole() (datavis.views.DataView method)
setText() (datavis.views.SlicesView method)
(datavis.widgets.SpinSlider method)
(datavis.widgets.TextView method)
setToolButtonStyle() (datavis.widgets.ActionsToolBar method)
setupColumnsWidth() (datavis.views.ColumnsView method)
setupVisibleColumns() (datavis.views.ColumnsView method)
setValue() (datavis.views.MultiSliceView method)
(datavis.views.SlicesView method)
(datavis.widgets.IconSpinBox method)
(datavis.widgets.SpinSlider method)
setView() (datavis.views.DataView method)
(datavis.views.VolumeView method)
setViewMode() (datavis.widgets.AxisSelector method)
setViewRect() (datavis.views.ImageView method)
setXLink() (datavis.views.ImageView method)
setYLink() (datavis.views.ImageView method)
SHOW_CURRENT (datavis.widgets.AxisSelector attribute)
showFile() (emvis.views.EmBrowser method)
showHistogram() (datavis.views.ImageView method)
showMenuButton() (datavis.views.ImageView method)
showPageBar() (datavis.views.DataView method)
showRoiButton() (datavis.views.ImageView method)
showStatusBar() (datavis.views.DataView method)
showToolBar() (datavis.views.DataView method)
(datavis.views.ImageView method)
sigAxisChanged (datavis.widgets.AxisSelector attribute)
sigCurrentItemChanged (datavis.views.DataView attribute)
sigCurrentRowChanged (datavis.views.ItemsView attribute)
sigCurrentTableChanged (datavis.views.DataView attribute)
sigPageChanged (datavis.widgets.PageBar attribute)
sigScaleChanged (datavis.views.ImageView attribute)
sigValueChanged (datavis.widgets.SpinSlider attribute)
SlicesModel (class in datavis.models)
SlicesView (class in datavis.views)
SpinSlider (class in datavis.widgets)
T
TableConfig (class in datavis.models)
TableModel (class in datavis.models)
TextView (class in datavis.widgets)
TextWidget (class in datavis.widgets)
toEmType() (emvis.utils.EmType class method)
toModel() (emvis.utils.EmType class method)
toNumpy() (emvis.utils.EmType class method)
TriggerAction (class in datavis.widgets)
U
updateImagePanel() (datavis.views.DualImageListView method)
(datavis.views.ImageListView method)
(datavis.views.ImageMaskListView method)
(datavis.views.VolumeListView method)
updateImageScale() (datavis.views.ImageView method)
updatePage() (datavis.views.ColumnsView method)
updateViewConfiguration() (datavis.views.ColumnsView method)
(datavis.views.ItemsView method)
updateViewPanel() (datavis.widgets.Browser method)
(emvis.views.EmBrowser method)
V
VERTICAL (datavis.widgets.AxisSelector attribute)
(datavis.widgets.ViewPanel attribute)
verticalFlip() (datavis.views.ImageView method)
viewBoxMouseMoved() (datavis.views.PickerView method)
ViewPanel (class in datavis.widgets)
ViewsFactory (class in emvis.views)
VolumeListView (class in datavis.views)
VolumeModel (class in datavis.models)
VolumeView (class in datavis.views)
Z
ZoomSpinBox (class in datavis.widgets)